Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12542075 chr8:10464206 G/A 2.27E-5 487 30.9 29.97 51.43 KM Plot
PRAD rs12547192 chr8:10464179 C/G 2.22E-5 488 30.8 29.97 51.43 KM Plot
PRAD rs12549149 chr8:145158446 C/T 1.69E-5 482 19.1 30.57 31.13 KM Plot
PRAD rs12550729 chr8:145155408 C/T 1.69E-5 482 19.1 30.57 31.13 KM Plot
PRAD rs12551209 chr9:124283089 G/A 1.79E-6 488 30.97 31.87 24.27 KM Plot
PRAD rs12563709 chr1:93777920 C/T 3.62E-6 494 31.3 28.13 18.97 KM Plot
PRAD rs12564155 chr1:31805314 G/A 8.33E-6 493 30.97 31.27 22.87 KM Plot
PRAD rs12565127 chr1:31817499 A/C 8.04E-6 494 30.97 31.27 22.87 KM Plot
PRAD rs12566574 chr1:31767162 T/G 2.12E-6 487 31.2 31.23 22.85 KM Plot
PRAD rs12568352 chr1:242000444 T/C 8.68E-5 491 30.8 31.33 29.13 KM Plot
PRAD rs12569774 chr10:99412669 T/C 3.22E-9 492 31.27 29.28 24.67 KM Plot
PRAD rs12577940 chr11:1389147 G/A 1.36E-6 490 31.27 26.13 61.83 KM Plot
PRAD rs12590282 chr14:32678286 C/T 0.000129 494 28.62 29.1 31.27 KM Plot
PRAD rs12592193 chr15:82516039 T/C 4.19E-10 482 29.52 35.77 29 KM Plot
PRAD rs12594136 chr15:82527738 A/G 3.88E-10 484 29.4 36.47 29 KM Plot